Viktor Senderov
21 April 2021
trees
[1] "Accipitridae" "BC7" "P20b" "TitTyranRest"
num_nodes
[1] 349 179 249 631
depth
[1] 30 14 15 22
Models:
[1] "birch-clads2" "clads2-d-λμασ" "clads2-factor"
Priors:
floating_t kLambda = 1.0;
floating_t thetaLambda = 1.0;
floating_t epsMin = 0.0;
floating_t epsMax = 1.0;
floating_t kMu = 1.0;
floating_t thetaMu = 0.5;
floating_t a = 1.0;
floating_t b = 0.2;
evaluate_tree(prepare_tree(1))
var mean R
birch-clads2 1.0163232 -1196.680 500
clads2-d-λμασ 0.6894123 -1197.568 35
clads2-factor 15.3663905 -1200.003 20
num_nodes[1]
[1] 349
depth[1]
[1] 30
evaluate_tree(prepare_tree(1))
var mean R
birch-clads2 1.01632322 -1196.680 500
clads2-d-λμασ 0.08270667 -1197.048 10
clads2-factor 0.32598095 -1197.117 15
num_nodes[1]
[1] 349
depth[1]
[1] 30
evaluate_tree(prepare_tree(1))
var mean R
birch-clads2 1.0163232 -1196.680 500
clads2-d-λμασ 0.6894123 -1197.568 35
clads2-factor 15.3663905 -1200.003 20
num_nodes[1]
[1] 349
depth[1]
[1] 30
evaluate_tree(prepare_tree(1))
var mean R
birch-clads2 1.01632322 -1196.680 500
clads2-d-λμασ 0.08270667 -1197.048 10
clads2-factor 0.32598095 -1197.117 15
num_nodes[1]
[1] 349
depth[1]
[1] 30
evaluate_tree(prepare_tree(3))
var mean R
birch-clads2 0.2844107 -732.6992 500
clads2-d-λμασ 0.1001505 -732.0762 35
clads2-factor 1.6346493 -733.3985 20
num_nodes[3]
[1] 249
depth[3]
[1] 15
evaluate_tree(prepare_tree(3))
var mean R
birch-clads2 0.28441072 -732.6992 500
clads2-d-λμασ 0.01558204 -731.9716 10
clads2-factor 0.09842724 -732.6297 15
num_nodes[3]
[1] 249
depth[3]
[1] 15
evaluate_tree(prepare_tree(4))
var mean R
birch-clads2 1.7448063 -2260.875 500
clads2-d-λμασ 0.7928835 -2260.864 35
clads2-factor 14.0067105 -2263.895 20
num_nodes[4]
[1] 631
depth[4]
[1] 22
evaluate_tree(prepare_tree(4))
var mean R
birch-clads2 1.7448063 -2260.875 500
clads2-d-λμασ 0.7928835 -2260.864 35
clads2-factor 14.0067105 -2263.895 20
num_nodes[4]
[1] 631
depth[4]
[1] 22
logz = c(-11053.1,-11053.3,-11051.8,-11052,-11053.5,-11053.1,-11051.3,-11051.9,-11053.5,-11054,-11052.5,-11054.5,-11051.1,-11052.4,-11052.4,-11052.9,-11054,-11053.7,-11051)
var(logz)
[1] 1.064678
Prepare data